Manipulating multiple sequence alignments via MaM and WebMaM
نویسندگان
چکیده
منابع مشابه
Manipulating multiple sequence alignments via MaM and WebMaM
MaM is a software tool that processes and manipulates multiple alignments of genomic sequence. MaM computes the exact location of common repeat elements, exons and unique regions within aligned genomics sequences using a variety of user identified programs, databases and/or tables. The program can extract subalignments, corresponding to these various regions of DNA to be analyzed independently ...
متن کاملMultiple Sequence Alignments in Linguistics
In this study we apply and evaluate an iterative pairwise alignment program for producing multiple sequence alignments, ALPHAMALIG (Alonso et al., 2004), using as material the phonetic transcriptions of words used in Bulgarian dialectological research. To evaluate the quality of the multiple alignment, we propose two new methods based on comparing each column in the obtained alignments with the...
متن کاملA GUI for Visualising and Manipulating Multiple Ontology Alignments
This paper presents a Web-based environment for visualising and manipulating multiple ontology alignments at schema-level. While most solutions are limited to the visualisation of single alignments and are still provided as part of specific standalone matching systems, we propose an open environment that is not bound to any specific system. Within this graphical environment, users can manually ...
متن کاملEvolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal multiple sequence alignment is prohibitively expensive. Heuristic alignment algorithms represent a practical trade-off between speed and accuracy, but they can be improved. We present EVALYN (EVolved ALYNments), a novel...
متن کاملVOAR 3.0 : a Configurable Environment for Manipulating Multiple Ontology Alignments
This paper presents a Web-based environment for visualizing, editing and evaluating multiple ontology alignments. Users can configure their environment according to their needs and tasks, choosing different visualization modes and creating different profiles. They can apply a set of operations on the alignments (filtering, merge, etc.) and evaluate them against a reference one, using classical ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2005
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gki406